Downloads

 

Description File Size (MB)
 UMD3.1 reference sequence GFF3 Bovine_UMD3.1_reference.gff3.gz 674
 Official Gene Set version 2 mapped to UMD3.1 via UCSC liftOver Bovine_OGSv2_liftOver_UMD3.1.gff3.gz 3.5
 NCBI RefSeq gene predictions on UMD3.1 Bovine_RefSeq_UMD3.1.gff3.gz 3.8
 Ensembl gene predictions mapped to UMD3.1 via UCSC liftOver Bovine_Ensembl_liftOver_UMD3.1.gff.gz 3.7
 FGenesH gene predictions mapped to UMD3.1 via UCSC liftOver Bovine_FGenesH_liftOver_UMD3.1.gff3.gz 4.4
 FGenesHPP gene predictions mapped to UMD3.1 via UCSC liftOver Bovine_FGenesHPP_liftOver_UMD3.1.gff3.gz 3.4
 GeneID gene predictions mapped to UMD3.1 via UCSC liftOver Bovine_GeneID_liftOver_UMD3.1.gff3.gz  2.6
 Bovine cDNA alignments mapped to UMD3.1 via UCSC liftOver Bovine_cDNA_alignment_GMAP_liftOver_UMD3.1.gff3.gz  0.6
 Bovine HapMap SNP data on UMD3.1 BovineHapMapSNP50_UMD3.1.gff3.gz 1.0
 SGP gene predictions mapped to UMD3.1 via UCSC liftOver Bovine_SGP_GMAP_liftOver_UMD3.1.gff3.gz  2.2
 Metazoa SwissProt alignments mapped to UMD3.1 via UCSC liftOver Metazoa_swissprot_liftOver_UMD3.1.gff3.gz  3.5

  

Bulk data downloads

The Assembly 4.0 dataset as GFF3, sorted by chromosome

 

Full Bovine Official Gene Set v2

Fasta file of CDS sequences   

Fasta file of protein sequences

    

Subset of Bovine Official Gene Set v2 derived from manual annotations

Fasta file of CDS sequences

Fasta file of protein sequences

 

Other files

ID mappings between the Bovine Official Gene Set v2 and the NCBI and Ensembl genes (tab delimited text)